VMware Data Recovery (VDR) backup solution has support for file level restore, or FLR as VMware calls it in context of VDR product. Even though FLR is still experimental feature it hasn’t failed me yet. FLR is currently available only for Windows XP, Vista, 2003 and 2008 virtual machines, there is no word about Linux support but it is most likely coming.
To use FLR functionality you need command line FLR client on Windows VM protected by VDR appliance. FLR client is just a single executable vdrFileRestore.exe which is available at same download page you got VDR appliance from.
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